rnaquast
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ablab
Quality assessment of de novo transcriptome assemblies from RNA-Seq data
Hello! I'm trying to use rnaQUAST on my data. When I run rnaquast --test it works perfectly: Finished: 2023-11-21 21:32:02 Elapsed time: 0:03:24.335269 NOTICEs: 1; WARNINGs: 0; non-fatal ERRORs: 0...
Hi, I have an issue in the gmap aligning step while using a reference genome. I attach some useful .logs. [rnaQUAST.log](https://github.com/ablab/rnaquast/files/12810056/rnaQUAST.log) [gmap.transabyss_cdhit.err.log](https://github.com/ablab/rnaquast/files/12810059/gmap.transabyss_cdhit.err.log) [gmap_build.err.log](https://github.com/ablab/rnaquast/files/12810060/gmap_build.err.log) The weird thing is that I could...
Hi, My rnaQUAST run completed with 1 non fatal error. Please see below the error message: "GeneMarkS: error on last system call, error code 139 Abort program" I rerun the...
I'm using rnaquast with blat and and Trinity assembled transcriptome. ``` 2023-07-06 20:10:51 Getting DISTRIBUTION report... Drawing cumulative transcript / isoform length plot... 'dict_keys' object cannot be interpreted as an...
Hello! I used Quast for times and know I am trying to use the rnaQUAST. Both tools are mentioned as great and robust quality assessment techniques. Some thing are not...
Hi, thank you for this great tool. My rnaQUAST job appears to be hanging with no progress for >36 hours. Nothing has been written to the rnaQUAST database (`Saccharomyces_cerevisiae.R64-1-1.108.db`) in...
Hi @andrewprzh , I have an assembled metaT.fasta file and the 32 pairs of raw reads (.fq) that i used for the assembly. I would like to use rnaquast to...
