Abolfazl (Abe)

also, it would be nice if it can return `ax` so the user can modify generated plot as desired.

Hi @kexinhuang12345, I think DepMap and CCLE datasets are multi-modal readouts form different assays performed on cancer cells and these are / can be used in many different tasks. Thus,...

Hi @kexinhuang12345 - quick question. Have you ever thought about including tasks related to connecting cancer cell line to cancer patients? e.g. https://github.com/broadinstitute/celligner

Hi @kexinhuang12345, > Interesting! What is the relevant machine learning task formulation for it? I think there is a wide range of ML tasks possible with the CCLE and DepMap...

@amva13 This PR is ready for your review, thanks! It mostly contains minor fixes missed in #207

Hi @amva13, I'll be happy to write unit tests and replace primekgdev with Primekg api.

Thanks @kexinhuang12345 > The KG class should be probably defined under the tdc/utils folder. Since it is a data function. done – https://github.com/mims-harvard/TDC/pull/207/commits/5eee5a6d974f3680920a9073024513dc8ae7b960 > Is it possible to modify PrimeKG...

hey @amva13 – thanks for your response. I got this error, any thoughts? ``` OK (skipped=1) /home/runner/work/TDC/TDC All base tests passed --- tdc/resource/primekg.py (original) +++ tdc/resource/primekg.py (reformatted) @@ -12,6 +12,7...

> Yes this is an error from the linter. It's from your code's formatting. In theory, you should be able to fix by simply replacing the contents of your file...

Hi @amva13 – we have a discussion with @kexinhuang12345 here https://github.com/mims-harvard/TDC/pull/207#issuecomment-1784357449 which motivated me to modify PrimeKG class. This is what Kexin suggested: > Is it possible to modify PrimeKG...