a-chahin
a-chahin
This pull request adds two mapping tables for `procedures`. The first CSV file `proc_itemid` contains `itemid` to `omop_concept_id` and `omop_concept_code` for `SNOMED`. The second CSV file `proc_datetimeevents` is for `datetimeevents`....
This pull request adds two mapping tables for `chartevents`. The first CSV file `meas_chartevents_main` contains `itemid` to `omop_concept_id` and `omop_concept_code` for either `LOINC` or `SNOMED` depending on the concept. The...
This pull request updates the lab results mapping to LOINC table. Compared to the old table, new columns were added as well as new mappings. The table was reviewed by...
This pull request adds a derived mapping table for medications. The CSV file contains `itemid` to `omop_concept_id` and `omop_concept_code` for `rxnorm` mappings codes. I manually mapped the RxNorm codes using...
This pull request adds a derived mapping table for `outputevents`. The CSV file `outputevents_to_loinc` contains `itemid` to `omop_concept_id` and `omop_concept_code` for `LOINC` codes. Mapping codes were reviewed and verified by...
This pull request adds two mapping csv files for vital signs concepts from the `d_items` and `chartevents` tables in MIMIC-IV v2.0. The first file `chartevents_to_loinc.csv` contains `itemid` to `LOINC` mappings....
This pull request adds two mapping csv files for lab concepts from the `d_labitems` definitions table in MIMIC-IV v2.0. The first file `d_labitems_to_loinc.csv` contains `itemid` to `LOINC` mappings. There will...
This pull request adds two mapping csv files for procedures concepts from the `d_items` and `procedureevents` tables in MIMIC-IV v2.0. The first file `procedureevents_to_snomed.csv` contains `itemid` to `SNOMED-CT` mappings. The...
We are using a script to automate the mapping of medication data from NDC codes to RxNorm RXCUIs utilizing the "Non-Standard to Standard Relationship" mapping found in the OMOP common...