Lukas Heumos

https://github.com/mlf-core/nextflow-lcep But yeah, a module would be cool. The 2 projects complement each other. Wednesday, 10 March 2021, 05:00PM +01:00 from Edmund Miller [email protected] : >Nothing fancy, and not exactly...

@Emiller88 yeah. There is a lot of stuff that we can do to improve the bridging of mlf-core and nf-core. I might open a more detailed issue for that in...

@KevinMenden Not necessarily mlf-core itself, but rather for tools that perform predictions. What I could think of (going wild here) is a single package, which takes in mlf-core trained pytorch/tensorflow/xgboost...

> Anyway if you keep it flexible enough (which you should) then I'm not sure whether a module to encapture all the models is doable/ makes sense. Just my two...

> Just dropping one of my use-cases here: > > I use nextflow to make my single-cell analyses reproducible. The pipeline chains a bunch of scripts and jupyter notebooks together...

> > 3D convolution currently cannot be made deterministic. > > Shouldn't pytorch raise an Exception in that case if `use_deterministic_algorithms` is set to True? Yes. 1. This flag is...

> > The models need to be trained based on mlf-core (which enforces deterministic algorithms only) > > How do you actually do that? just by linting? Mix of linting,...

@Imipenem No, this is for the templates :)

Apparently slack has a new "feature" (quote from their customer service to me lol) that you cannot create non expiring invitation links anymore. I absolutely don't want to change the...

I can now create unlimited invitation links again. In 11 days Slack premium expires and I know whether this is persistent or not.