YuChrming

Dear Author I had a problem when I went augustus with commond `augustus --species=h1tg000001l training.new.gb.test > test.2.CRF.out`. The error information is in fig below.How could I solve it ? ...

Dear writer, I was very confused about the assembly results with Hi-C data. I used hifiasm to assemble a triploid genome, and the result looks perfect with N50 > 15M...

triploid assembly and usage of HiC

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Dear Author I am assembling a triploid material genome which is about 1GB by HiFi and HiC data,use hifiasm 0.16.1-r375. My result of command shown as follow: command : `hifiasm...

ValueError: n_components=3 must be between 0 and min

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Dear Writer ! Thanks for your useful pipline, but I meet an error when use SubPhaser. My command `subphaser -i groups_genome.fasta -c groups_sg.config` My configue file  But I have...

Issue about partition result

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dear professor, I was assembling a triploid genome.The input of allhic is from hifiasm, `*.asm.p_utg.fa ` which is without "bubble". Runing the partition step, weird results were found. `ALLHiC_partition -b...

Dear Professor， I have a small wonder , when I execute "Optimize" and "plot" steps, I have tried the `sample.clean.bam` after "Filtering SAM file" and `prunning.bam` after "Prune" . I...

A question about Allele.ctg.table

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Dear Aouthr! For now, allhic is the closest software for success to polyploidy in which I used.But I have a bewilderment. When I use `Allele.ctg.table` pruning some hi-c signal, anchoring...