ALLHiC
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Issue about partition result
dear professor,
I was assembling a triploid genome.The input of allhic is from hifiasm, *.asm.p_utg.fa
which is without "bubble".
Runing the partition step, weird results were found.
ALLHiC_partition -b prunning.bam -r *.asm.p_utg.fa -e AAGCTT -k 3
The results are identical either I setting the parameter 3 or 17 , why?
Cluster result show that nearly all the contigs(3300+) devided in one group, while residues were in 16 groups and less than 200 contigs in total.Is it normal?
Thank and expect your response!