Xiaolan89

Hi, I tried to use refineM to remove contamination based on genomic properties and taxonomic assignments. But I found the targeted bins is hardly refined which is 12% contaminated, so...

installation issue

2

Hi, I installed refineM by sudo pip command, but when I tried to confirm its installation by type: refinem --version the error message shows: usage: refinem {scaffold_stats,genome_stats,taxon_profile,taxon_filter,outliers,ssu_erroneous,kmeans,dbscan,split,manual,reference,compatible,modify_bin,filter_bins,unique,bin_compare,call_genes,unbinned} ... refinem: error:...

Hi, I think this work is interesting and I got some bins affiliated with same genus from metagenomes recently. So I am trying to constructed pangenome network based on them....