RefineM
RefineM copied to clipboard
warning in taxon_profile
Hi,
I tried to use refineM to remove contamination based on genomic properties and taxonomic assignments. But I found the targeted bins is hardly refined which is 12% contaminated, so I took a look into the outputs and found WARNINGs in the log file generated during taxon_profile (as attached). In addition, the taxonomic assignment results are all unclassified to the bins according to genome_summary.tsv (as attached) and nothing was filtered according to bin_reports. Is that normal? genome_summary.txt refinem.log
Besides, the targeted bin seems to be hardly refined after refining based on genomic properites, could you please recommend me which criteria would be better to adjust?
Thank you in advance!