XiaofeiSunUCSF

minimap2 error

6

Thanks for this great package. I got an error when try the test file > 'checking modules imports done checking bam for expected tags checking fasta restarting pipeline in existing...

the order to use the tools

10

Hi, Thank you for the wonderful tools. Do you have any recommended order to use those three tools (filter.bam, filter.vcf, sort.vcf)? Thanks Xiaofei

runSCENIC_3_scoreCells Valid 'mctype': 'snow' or 'doMC'

9

I got an error when run runSCENIC_3_scoreCells() 0:47 Step 3. Analyzing the network activity in each individual cell Number of regulons to evaluate on cells: 233 Biggest (non-extended) regulons: Elf1...