XiaofeiSunUCSF comments

Repositories
Issues
Comments

Results 13 comments of


                                            XiaofeiSunUCSF

the order to use the tools

> @XiaofeiSunUCSF Sorting the VCF file shouldn't take that long even for such a big file. What is the exact command you run? > > What is the output of...

@ghuls I read one comment from https://github.com/statgen/popscle/issues/25 Can I just use `zcat ALL.wgs.phase3_shapeit2_mvncall_integrated_v5b.20130502.sites.vcf.gz | sed '/^##contig/d' | gzip -c > ref_stripped.vcf.gz` to suppress the header and skip sort_vcf_same_as_bam.sh step?

runSCENIC_3_scoreCells Valid 'mctype': 'snow' or 'doMC'

> I get this same error. Would really appreciate some guidance! > Thanks in advance!! Hi, I fount this error was related to nCores. After adjusting nCores=1, no errors come...