Wangchentong

process stuck at rescorediagonal when do cluster

7

## Expected Behavior i am doing a cluster process on 15 million seq, but i am stuck on rescorediagonal, watch with top command, i find it's not memory's issue since...

database cluster by pure structure similarity

2

@milot-mirdita @martin-steinegger #### Hi, i would like to ask a technical detail question:   i want to cluster a databse purely by structure similarity for my intention in another [issue](https://github.com/steineggerlab/foldseek/issues/131).   In...

Dataset curation questions

6

## Expected Behavior **Hi guys, thanks a lot for making this amazing tool!** **here is my backgorund** I would like to use AFDB_Cluster to expand structure databse(PDB dataset) to get...

A observed discrepency between alignment-type 3Di+AA / 3Di

2

## Expected Behavior Thanks for your amazing tool! I am clustering a bunch of afdb subset which has high confidence with two alignment-type 3Di+AA / 3Di. In my intuition, 3Di...

Cluster based on e-value/tmscore ?

3

## Expected Behavior When i run the easy-cluster wih a set of rfdiffusion generated structures, i obeserve that with foldseek cluster program which based e-value will give the ooposite trend,...