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Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment

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I tried running your Prophage_Tracer for the first time today and I got this error awk: cmd. line:1: fatal: division by zero attempted I followed your directions to index with...

Hello! I have some samples that we have no Illumina reads for. Do you have any sense of whether the PacBio data will produce the split reads to work appropriately...

Hello! Thank you for your previous help. I now have a set of prophages identified by Prophage_tracer that I want to further investigate and I want to better understand the...