Division by zero error?

[leannmlindsey]

I tried running your Prophage_Tracer for the first time today and I got this error awk: cmd. line:1: fatal: division by zero attempted

I followed your directions to index with bwa, then map with bwa then use samtools and everything worked up to this point in the script:

${prophage_dir}/prophage_tracer.sh -m ${output_dir}/test_strain.rmdup.sam -r ${ref_genome} -p test_strain

Do you have any test data that I can try to see if it is a problem with the input data?

Thank you LeAnn