U201412486

Results 3 issues of U201412486

How to set the options with SAMtools mpileup , which make base call with minimum-read depth of 5 ×, including at least one read on each strand.

I want to make base calls with requiring a minimum-read depth of 5 ×, including at least one read on each strand.How can I set the options while using SAMtools...

Error in matexpo(Q * EL[i]) : NA/NaN/Inf in foreign function call (arg 1)

Hi, When I used the data [data.zip](https://github.com/katiesaund/hogwash/files/9532128/data.zip) to run the code below, It reported the error `Error in matexpo(Q * EL[i]) : NA/NaN/Inf in foreign function call (arg 1)`. `tree

EOF marker is absent. The input is probably truncated.[bam_header_read] invalid BAM binary header (this is not a BAM file)

Hi, I use bwa to produce a bam file.When I handle the bam file with other program，it report error below: >> [bam_header_read] EOF marker is absent. The input is probably...