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                                            U201412486

Smart-seq2?

Hi, @itslittman @ZiyiWang7 Can you perform genome-wide germline calling using Smart-Seq2 data? I got the error: `Exception in thread "Thread-2" java.lang.RuntimeException: java.util.zip.DataFormatException: invalid code lengths set at net.sf.samtools.util.BlockGunzipper.unzipBlock(BlockGunzipper.java:112) at net.sf.samtools.util.BlockCompressedInputStream.inflateBlock(BlockCompressedInputStream.java:383)...