Tom Harrop

---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). ### General instructions * If this PR adds or updates a recipe, use "Add" or "Update"...

`PURGEDUPS_PURGEDUPS` migration to nf-test

4

## PR checklist Closes #7674 - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...

We're using shred to split a large fish chromosome into chunks. We've found that setting `length=550000000` gives us an error, but `length=500000000` works. ``` minlen=1, maxlen=-1 Input is being processed...

Hi, Just reporting this. It could be a conda thing. The file is [`test_trim.fastq`](https://github.com/rrwick/Filtlong/blob/main/test/test_trim.fastq) from this repo. Cheers, Tom ``` $ apptainer exec \ docker://quay.io/biocontainers/filtlong:0.3.1--h077b44d_0 \ filtlong \ --min_length 1000...

**Describe the bug** `agat_convert_sp_gff2gtf` introduces duplicate transcript_id, and it gets counted twice by `agat_sp_statistics` (possibly related to #331). **General** - AGAT version 1.5.1 - AGAT container from docker://quay.io/biocontainers/agat:1.5.1--pl5321hdfd78af_0 - OS:...