Tom Harrop

I'm having this problem too on our compute server with 1 TB of RAM. Here's the Spades error: ```: Error in malloc(): out of memory. Requested: 365790526992, active: 127263571968``` Here's...

Thanks for the answer! Any idea why that would happen when there is more than 800 Gb free?

I was having both of these problems (also #243 seems similar?) on Debian 10, and I fixed it by adding the following to `sniproxy.conf`: ``` resolver { mode ipv4_only }...

Thanks for letting me know @zhouxp9709 I've also had this problem with bamfiles that contain mapped reasds. I think it's only happening with Genemark-ETP, because the bamfile by itself works...

Hi @nextgenusfs I’m trying to troubleshoot this in the Galaxy wrapper. The wrapper has a mv command that only expects one *.tbl file. Are there situations when funannotate would produce...

It's because there are sometimes multiple tbl and sqn `*part_n` files in the output. ``` $ ls -lh full_run_output/annotate_results/*.tbl -rw-rw-r-- 1 tom tom 2.4M Oct 19 15:20 full_run_output/annotate_results/funannotate_subject.part_10.tbl -rw-rw-r-- 1...

Hi Robert, To clarify, this machine has 1 TB total and racon was using ~900 GB. Swap wasn't being used according to `free` so I don't think I'm running out...

Thanks, I'll keep an eye on #110. You can close this if you like and I'll reopen it if necessary.

Yes, it's strange that it works on one computer and not the other. BTW I've run `racon_test` successfully on both machines.

I can't tell if it's the exact same spot, but the log always stops in as shown in the OP. I ran it again to check for sure if it...