Tom Harrop
Tom Harrop
Hi, I'm working on a wrapper for PacBio's [GenomicConsensus Arrow](https://github.com/PacificBiosciences/GenomicConsensus) polishing algorithm. I plan to submit the wrapper in a PR once it's ready. Tom
FOR CONTRIBUTOR: * [x] I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool is appropriate for the tools-iuc repo. * [ ] License permits unrestricted use (educational + commercial) *...
As suggested by @bernt-matthias in https://github.com/galaxyproject/tools-iuc/pull/5741. Using a collection as input would allow this tool to be used with workflows. I'll work on it.
Obviously this is caused by bad input data, but maybe braker3 could check the bamfile and stop with an error message, or run GeneMark-EP instead? ``` ERROR in file /opt/BRAKER/scripts/braker.pl...
Hi, I have a run of `racon` using Illumina reads for a third round of polishing on a Nanopore assembly which seems to have loaded the sequences into memory then...
Hi, I'm trying to understand the difference between the read overlap parameters `--force-rs`, `-S` and `--force-preovec`. Do they all do the same thing? Also, I've noticed there are different usage...
Hi, I've been wrapping `hifiasm_meta` to install it on Galaxy and I've come across three reproducible segfaults using the biocontainer, which is built from the conda package. I've uploaded the...
**Snakemake version** 7.32.3 **Describe the bug** Params that run functions don't seem to get re-evaluated if the job fails and gets retried. I noticed this when I was trying to...