EarlGrey

EarlGrey copied to clipboard

Hi, One of the features I found useful with EDTA was the script for combining consensus repeat libraries across multi-sample datasets. Is there a way to combine Earl Grey results...

swomics

TobyBaril

Streamline the merge process, only attempt strict if loose fails NEEDS TESTING

TobyBaril

Hi, I'm running Earlgrey on chymomyza amoena (~380mb) assembly but the repeatmodeler is taking too much runtime. Is there a way to limit repeatmodeler rounds in this pipeline. I have...

DhakadPankaj

Hi! I was looking for a way to filter out overlapping sequences of my RepeatCraft output and tried your filteringOverlappingRepeats.R script. However, it seems to have an issue with chimeric...

pellescholten

Dear author, I am immensely grateful for providing such a convenient and useful tool. I have successfully completed the data testing and achieved satisfactory annotation results. Now, I have a...

JMUwenjian

Hello, thank you very much for this nice tool, I am running a fungal genome for the first time but it seems that there was a problem at the end,...

enriquepola1996

Summary plot fails because `bc` is missing (maybe)

2

Hi, Thanks for a great program, could you help me debug an issue I am having? I am running from the docker container (tobybaril/earlgrey_dfam3.7:latest), and it almost completes, but dies...

chriswyatt1

Thank you hugely for your resource. Do you have suggestions for solving this error message (full log attached as [earlgrey.log](https://github.com/user-attachments/files/16143723/earlgrey.log))? _> Traceback (most recent call last): File "/home/bop21kgl/.conda/envs/earlgrey/share/earlgrey-4.2.4-1/scripts//TEstrainer/scripts//splitter.py", line 8,...

kiran-lee

RepeatMasker fails upon finishing

4

Hi, I'm trying out the program on a few new genomes and am caught on a RepeatMasker error that I can't quite figure out. I haven't been able to find...

DrPintoThe2nd