TimoLassmann

Hi, I believe this *should* be fairly straight forward to implement. The main library function would take as input a char** for the sequences, int* for sequence lengths and optionally...

Oh dear deadlines ;) I should be able to pull something together within the next week. I might take this opportunity to switch to cmake...

Hi, I added a new branch "cmake" and added a kalign library with the function: `int kalign(char **seq, int *len,int numseq, char ***aligned, int *out_aln_len);` Also included is a small...

Great. Let me know what works, what doesn't and if there is a need to change the default gap extension parameters. Happy aligning! /T

Hi, I just saw your messages. I can address these queries by next week without too much hassle. Thanks, T

Hi, I re-organized the kalign code in the cmake branch. There is now a shared kalign library which can be installed and used like this: ``` if (NOT TARGET kalign::kalign)...

Hi, The latest release of kalign (3.3.2) compiles on M1 and therefore should also compile on other non-x84 systems.

Hi, I think I encapsulated add these platform specific headers in pre-processor statements (`#ifdef HAVE_AVX2`). Therefore I _think_ kalign should compile using standard C headers on all platforms lacking the...

In version 3.3.4 this can be set using the -nthreads option.

Thanks for reporting. I cannot replicate this error on my machines. Can you provide more context?