Timmywang1

problems downloading genome

1

Hi kblin, Meeting error when run following: ncbi-genome-download --species-taxids my_taxids.txt bacteria --formats fasta ERROR: Download from NCBI failed: ConnectionError(MaxRetryError("HTTPSConnectionPool(host='ftp.ncbi.nlm.nih.gov', port=443): Max retries exceeded with url: /genomes/all/GCF/003/325/715/GCF_003325715.1_ASM332571v1/md5checksums.txt (Caused by NewConnectionError(': Failed...

Error in filter_sequences_by_length.pl

2

When I run the command ‘perl filter_sequences_by_length.pl -input /data/Timmy/metagenome_test/ERR1051325.fa -output /data/Timmy/plasflow/filtered_ERR1051325.fa -thresh sequence_length_threshold’ Error: “(plasflow) [wangbh@tc6000 Plasflow]$ perl filter_sequences_by_length.pl -input /data/Timmy/metagenome_test/ERR1051325.fa -output /data/Timmy/plasflow/filtered_ERR1051325.fa -thresh sequence_length_threshold Can't locate Bio/SeqIO.pm in @INC...

HI, Ckend what is wrong? what shall I do that ERROR:Sci-Hub:Failed to complete search with query Tara Oceans studies plankton at PLANETARY SCALE (connection error) ERROR:Sci-Hub:Failed to complete search with...

error in kreport2mpa.py

6

Hello， Thanks for your powerful tools. I meet a problem,when i run the script: /data/Timmy/Bracken/kreport2mpa.py -r ./OUT/TEST.S.bracken -o ./OUT/TEST1.report ## Traceback (most recent call last): File "/data/Timmy/Bracken/kreport2mpa.py", line 173, in...

stage two error!!

2

Hi developer, when run: perl argoap_pipeline_stagetwo_version2.pl -i extracted.fa -m meta_data_online.txt -o testout -l 25 -d 80 -e 1e-5 error: No such file or directoryHERESTRUCTURE or run: [tc6000 Ublastx_stageone]$ perl argoap_pipeline_stagetwo_version2.pl...