TileDB-VCF

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The new scikit-build-core setup copies external shared objects into Python wheel

4

There are various situations where we want to be able to build tiledbvcf-py against an existing external `libtiledbvcf.so`: * In the conda recipes, we build a separate conda binary for...

jdblischak

delete sample from database: segmentation fault on CLI

5

It seems there is a way to delete samples from a uri/database via the CLI, ie `tiledbvcf delete`. I'm getting an error when I try this and need help understanding...

nextgenusfs

Some questions about functionality

3

Dear developers and community, I am looking at this technology with much interest and I have a couple of questions. 1. Using TileDB-VCF with TileDB Embedded, is there any built-in...

andreaswallberg

Java API: Request to support loading Mac-ARM libraries

1

Our group is developing software, PHG (Practical Haplotype Graph, https://github.com/maize-genetics/phg_v2), that makes use of TileDB-VCF to store VCF files. Our own code is written using Kotlin, a popular Java replacement,...

pjbradbury

Cannot submit_and_finalize query

2

Hi! I am trying to ingest samples, but run into the following problem: ``` _40b48cf415984c70a4ab49e225d7c8ef_21 samples = SAMPLE [2024-02-13 09:59:31.061] [tiledb-vcf] [...] [debug] Finalizing last contig batch of [1, 1]...

dotinspace

export with -m (merge) option

3

Hello - I am using tiledbvcf to create a dataset that I would later like to be able to export as a merged vcf file. I can successfully, load and...

lynnjo

Preparing for future bioconda submission

10

This isn't urgent, but I recently investigated the potential submission to bioconda, so I wanted to create this reminder and share my notes: * Because TileDB already uses the conda-forge...

jdblischak

Use System pip to install TileDB-Py

1

awenocur

Nightly build for Windows

4

This nightly build for Windows is a work-in-progress. The [existing GitHub Actions pipeline](https://github.com/TileDB-Inc/TileDB-VCF/blob/main/.github/workflows/windows.yml) to test TileDB-VCF against release libtiledb on Windows relies exclusively on conda (ie everything is built inside...

jdblischak

WIP

DimitrisStaratzis