ThomasGro

scar_score() with allele-specific segmentation file fails with Error in `[.data.frame`(seg, , 8) : undefined columns selected

6

Hi, I have generated a allele-specific segmentation file with CNVkit. I adapted the format to fit your input "... allele-specific segmentation file with the following columns: 1st column: sample name,...

issues with duplicated or missing names

2

I want to extract data from a big and deep XML file. I followed your example 2 workflows with library(xml2) and it worked to generate a list of terminal nodes...

Pvalue calculation not working with facets

5

### Expected behavior P-value calculation per facet ### Actual behavior Error in Surv(time.month, cnsr) : object 'time.month' not found In addition: Warning message: In xtfrm.data.frame(x) : cannot xtfrm data frames...