ThomasGro

Results 4 comments of ThomasGro

scar_score() with allele-specific segmentation file fails with Error in `[.data.frame`(seg, , 8) : undefined columns selected

One add on: when I add another column wioth ploidy information as in your example file: sample_name chromosome segment_start segment_end tcn nA nB ploidy model1 1 62676830 62677251 30 19...

scar_score() with allele-specific segmentation file fails with Error in `[.data.frame`(seg, , 8) : undefined columns selected

I did the following: This is the described input format for HRDscore: 1st column: sample name, 2nd column: chromosome, 3rd column: segmentation start, 4th column: segmentation end, 5th column: total...

scar_score() with allele-specific segmentation file fails with Error in `[.data.frame`(seg, , 8) : undefined columns selected

Please look at my comment from Jan 26th. You have to reorder the columns of the input table - at least that worked for me.

Pvalue calculation not working with facets

Hi bth117, indeed that works. Thank you for finding and providing this solution.