Begoniamatters

Choice of reference genome

2

I might have missed the information in the documentation, but I don't think there is a way to input a custom-made reference genome for the alignment step. If I have...

Different number of ASVs

3

I have been running DADA2 version 1.16.0 on a set of 95 samples using the Silva database with more Eukaryotes accession (https://zenodo.org/records/1447330). I have noticed that the number of ASVs...

Crash and reboot when using DADA2 with PR2

2

I have a problem with **dada2** rebooting my system when trying analysis with the **PR2** database. My system info: OS: Ubuntu 23.10 Hardware: HP HP EliteBook 840 G4 Processor: Intel®...

BiocParallel error

3

Environment specifications: R version 4.3.2 (2023-10-31) -- "Eye Holes" Linux OS: "Rocky Linux 8.9 (Green Obsidian)" packageVersion dada2 1.30.0 Hello, I am processing sequencing reads downloaded from Short Reads Archives....