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BiocParallel error

Open ThibauldMichel opened this issue 2 months ago • 3 comments

Environment specifications: R version 4.3.2 (2023-10-31) -- "Eye Holes" Linux OS: "Rocky Linux 8.9 (Green Obsidian)" packageVersion dada2 1.30.0

Hello, I am processing sequencing reads downloaded from Short Reads Archives. I saw this error message pop up just after cutadapt report. I have made some inquiries to know if it was due to Cutadapt itself, and apparently it is not this tool that trigger the problem. https://github.com/marcelm/cutadapt/issues/779#event-12572759126

Would you have seen this error before?

WARNING:
    One or more of your adapter sequences may be incomplete.
    Please see the detailed output above.
Stop worker failed with the error: reached elapsed time limit
Error: BiocParallel errors
  0 remote errors, element index: 
  156 unevaluated and other errors
  first remote error:
Execution halted

ThibauldMichel avatar Apr 29 '24 10:04 ThibauldMichel