Tim Robert-Fitzgerald

ENH: interface for whitestripe normalization

8

## Summary A processing pipeline for MS usually follows these preprocessing steps: 1. N4 correction 2. Registration 3. Skull stripping 4. Intensity normalization nipype provides interfaces for tools for all...

Non BIDS-compliant suffixes when using --bids flag

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### Summary After converting a large clinical dataset with heudiconv I'm seeing many files with odd suffixes. Some files have a heudiconvXXX suffix, which appears to be [logic added in...

nibabel can't read my data and heudiconv doesn't explain why

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### Summary When I run ``` docker run -v $PWD:/base nipy/heudiconv \ -d "/base/Data/{subject}-{session}/Hopkins/dicom/*/*.dcm" \ -o /base/Nifti/ -f convertall -s 01 -ss 001 -c none --overwrite ``` I get an...

parallelize sequential flag with drmaa or multiple cores

1

Submitting validator jobs to the cluster (in batches) provides massive speedup, running on multiple cores provides more modest speedup. one drawback is that the progress bar is kinda meaningless since...