Tim Robert-Fitzgerald

icon indicating a website link https://terf.github.io/website/ icon indicating an email [email protected]

icon company @near-miss icon location Philadelphia icon location Write code at @near-miss

Results 13 comments of Tim Robert-Fitzgerald

nibabel can't read my data and heudiconv doesn't explain why

@matthew-brett dcmstack does not seem to be able to read the entire directory of DICOMs. ``` tim@timbotron ~ % docker run -v /Volumes/2tb/takim/mscamras/Data/01-001/Hopkins/dicom/xxxxx:/data -ti --entrypoint="" nipy/heudiconv bash root@153b6ab3b348:/# git clone...

nibabel can't read my data and heudiconv doesn't explain why

@yarikoptic @matthew-brett @mgxd It seems Philips scanners have a variety of output options but one of them is a sort of "enhanced" dicoms which causes this issue. My enhanced dicoms...

parallelize sequential flag with drmaa or multiple cores

also when running on CUBIC you'll see the output ``` User-specified core binding strategy: linear User-specified core binding type: set User-specified core binding amount: 1 ``` for each job submitted...