Teodora Tockovska

Is it possible to access archived genome assemblies?

3

Is it possible to access older versions of genome assemblies (i.e GRCh37/hg19) and fetch entire gene entries? I can't find any resources on this subject matter so I assume that...

Question: Is it possible to reverse the scaling done by vst()?

4

I understand that vst() performs normalization, transformation, and scaling as it replaces a few functions in the Seurat workflow for normalizing data. Is it possible to reverse the scaling?

Flexbar package not found in Bioconda

5

Hi! I am trying to install Flexbar using Miniconda, but the package isn't found in any channels. I searched for Flexbar in the bioconda channels using the following command: `conda...

Visium Voxels Don't Load Properly on Combined Seurat Object using Seurat v5.1.0

8

Hi Seurat team! I have found a bug while using SpatialPlot() on a combined Seurat object containing 12 Visium samples. While using [CRAN's](https://cran.r-project.org/web/packages/Seurat/index.html) version of Seurat (v5.1.0), SpatialPlot does not...