SuhasSrinivasan

Config issue on Mac

5

Hi, Thank you for the recent comment on #167 . I took your suggestion and this time I tried on a Mac which never had ORFik and installed from GitHub....

Unable to set Custom Configuration

5

Hi, I noticed this issue since the first time of trying the vignette, but as there were important issues, waited to bring this to your attention. ### Issue 1 Following...

BiocFileCache path is not easy to use

1

Hi, Would it be possible to change the default directory of `BiocFileCache`? It is currently in a hidden directory and nested, and the file names are randomly generated. ``` Setting...

Ribo-seq Check plot needs more horizontal space

2

Hello again! This is a small bug/enhancement request. The read length on X-axis has less horizontal space, which is a consequence of the overall width of the plot. [STATS_plot_Ribo-seq_Check.pdf](https://github.com/Roleren/ORFik/files/14782056/STATS_plot_Ribo-seq_Check.pdf) Request...

Trying to install pyg through conda downgrades torch to CPU

2

### 😵 Describe the installation problem After using `conda` for `pytorch` installation, trying to install `pyg` through the official [guide](https://pytorch-geometric.readthedocs.io/en/latest/notes/installation.html). ``` $ conda install pyg -c pyg Channels: - pyg...

AttributeError: 'numpy.random._generator.Generator' object has no attribute 'rand'

1

This issue occurred when running `python run_framework.py -f numpy -p L` OS: Ubuntu 20.04.4 LTS Python: 3.7.13 numpy: 1.19.5 ``` ***** Testing NumPy with spmv on the L dataset *****...

Unable to install/use hdf5r due to issues locating libhdf5_hl.so.200

2

## System Details Operating System = CentOS Linux release 7.9.2009 (Core) R = 4.2.0 The `hdf5` version available through RPM is 1.8.12-13.el7, which is incompatible with `hdf5r 1.3.5`. Then, the...

### Is there an existing issue for this bug? - [X] I have searched the existing issues ### Required Troubleshooting Steps - [X] I have followed these troubleshooting steps -...

Dear Authors, Thank you for developing and maintaining fastp. It would be very helpful if fastp can operate on FASTQ files in an input directory and place the filtered files...

### Description of the bug Dear Researchers and Developers, Thank you for developing this pipeline. I am trying to go from FASTQ files to Salmon pseudo-alignment and quantification, as per...