Grammatikati Konstantin

Results 81 comments of Grammatikati Konstantin

Thank you for information, we have some problems with correct annotation storing, maybe you can give some advice? For now AnnotSV takes `-annotationsDir` argument which defines directory with `Annotations_Human`, `Annotations_Exomiser`,...

Here is our current `annotationsDir` (for `3.4.3`): ```sh # tree -L 2 /ref/AnnotSV/3.4.3 /ref/AnnotSV/3.4.3 ├── Annotations_Exomiser │   └── 2402 ├── Annotations_Human │   ├── AnyOverlap │   ├── BreakpointsAnnotations │   ├── FtIncludedInSV...

Thx for fast answer, what do you suggest to use before/if you implement these changes? Copies/symlinks of annotation dirs? Btw, there is another option - add annotation version to the...

Should we close this issue or leave open as a reminder?

Looks great, but how you determine default of `Annotations_Exomiser`? Should it be the latest version in directory or what?

Ok, structure looking great for us, thanks for detailed explanation, will wait for realization. Btw, in case you missed - `Exomiser` data moved out from FTP: https://github.com/exomiser/Exomiser/issues/612

Thank you for detailed explanation, we'll look into our data and check if: - Most of GTs are same - Most differences are in low-quality SVs We'll come back with...

We've checked differences and get a lot more, than expected (0.1%); We've got approximately 300 new/lost SV's between version (from 37k total) and if we examine same SVs (by `CHROM`,...

@julesjacobsen Hello, what is exomiser team position about data storage? Links in README are pointing to FTP: https://github.com/exomiser/Exomiser/blob/master/README.md#download-and-installation But last 3 releases from here https://github.com/exomiser/Exomiser/discussions/categories/data-release are missing on that FTP....

Thank you for the answer, but what about file path for scripts? We are using fixed path with only version change: ``` https://data.monarchinitiative.org/exomiser/data/2402_hg38.zip -> https://data.monarchinitiative.org/exomiser/data/2406_hg38.zip == https://data.monarchinitiative.org/exomiser/data/ + (2402 ->...