Sogand65
Sogand65
Hi, I have the same issue, does someone have a thought on this? Thanks
Sure! ## Advanced user cells.dsb.norm.adv
Hi Sebastian, I am also interested in using Arriba to find fusions for my single cell dataset since I could not find any reliable option for single cell data right...
> Hi Sebastian, > > Thanks so much for getting back to me! > > I went ahead and tried Arriba on my Smart-seq2 data (no UMIs), using the default...
Hi Sebastian, Sorry I accidentally deleted my previous message! Thanks a lot for the useful explanations and the very handy quick test, yes my ph+ AML sample returned reads that...
Thanks! in the second part (sophisticated version) you mean using STARsolo? since UMIs are involved?
Hi Sebastian, Thanks a lot for your explanations. I already tried regular STAR + Arriba and it gave me some fusions as expected and some new (that can be either...
Yes probably is the case! Thanks for your thoughts on this, it is very helpful! I’ll probably check STRsolo and will report back how it works! Unfortunately I did not...
Hi Sebastian, Thanks again for providing such a nice tool. I could successfully run STAR(regular) and Arriba on my scRNA-seq (from 10X) data and I got nice fusion genes that...
yes I wanna generate one .fa file that contains all selected fusions and create the .gtf file for them and will add them to my regular .fa and .gtf file...