SimonE1220

Customize Annotations

1

Dear all, I wanted to ask if I can customize the statistical annotations of the plot. For example: I have a p value of 0.032 and 0.00023 Can this values...

Dear all I have a question for this: https://liana-py.readthedocs.io/en/latest/notebooks/mofatalk.html Line [22] Here, we can see that certain interactions from Factor 1 have high positive loadings. These are interactions that are...

Dear all, I run python 3.11 mu.tl.mofa(mdata, use_obs='union', convergence_mode='medium', outfile=f'Saved_models/mofatalk{combo}.h5ad', n_factors=4, ) model = mofa.mofa_model(f"Saved_models/mofatalk{combo}.h5ad") lead to 'ascii' codec can't decode byte 0xce in position 2: ordinal not in range(128)...

BUG: p-Vales are not adjusted by "fdr_bh" but "bonf" works

2

Dea all, I am running version 0.6.0 and also tried the newest version. However, if I pass the p-Value correction by fdr_bh it retunrs always the uncorrected values. If I...