Silverfoxcome

In the issue #312 the user has the same problem as me. I will try with the absolute path to my targets :)

I get and error again but this time the program run a lot more. I'm attaching a copy of my log file here for more details [snippy.log](https://github.com/tseemann/snippy/files/9088930/snippy.log) While running, the...

Hi!!! I get an error again. I'm attaching a copy of my log file here for more details [snippy3.log](https://github.com/tseemann/snippy/files/9089002/snippy3.log) Like in the previous run, the program gave me several times...

Hi!! I ran the command without my targets in bed format (`virulent_protein_targets_sorted.bed`): `snippy-multi file4.txt --ref ncbi_hp_26695.gb --cpus 2 > runme.sh` `bash runme.sh` And it seems that all worked well. I'm...

Hi! thanks for the quick answer! I was mistaken and my sequences are already trimmed (the fastqc report shows no adapters or overrepresented sequences). Please, can you tell me what...

> That are huge files, so you probably won't have enough memory, you should cancel the run > > Just use the max memory option, you don't need that much...

Hi! Yes please! I'm still very interested in looking for heteroplasmy! Thank you so much for all your help :D

> As you can't get a good complete assembly, I would test heteroplasmy on a smaller region. > So make a fasta file with maybe 30000 bp sequence that doesn't...

Hi!! Thank you for your fast answer! Yes! The program giving all possible assemblies is really helpful!!! I have a close reference and I gave it to NOVOPlasty!! I'm assembling...

Hi! I'm mapping plastidic reads to the 8 different assemblies generated by NOVOPlasty to apply the Assembly Likelihood Estimator (https://github.com/sc932/ALE). Also, I aligned all the possible assemblies to the reference...