cellcall

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Issue with TransCommuProfile step 5 softmax for ligand

3

Hi all, I am running into an issue when trying to follow along the instructions to analyse ligand-receptor interactions using CellCall. when running the "TransCommuProfile" command, I am faced with...

LaviCor

error when run getHyperPathway

2

hi when i run this step pathway.hyper.list

Stufen-TONG

Error in FUN(X[[i]], ...) : only defined on a data frame with all numeric variables

1

Hello,thanks for your exellent development for exploring CCC. I met some errors as follow, can you help me ?   I don't know why, but the middle process informed...

cyqi6365

Questions about the LR-TF database

3

Thank you so much for developing the tool! I would like to know if in the LR-TF database you collected, are all LR's effects on TF activated? Is it possible...

qijt123

Where to find the table with complete ligand-receptor-TF-pathway data

1

Thanks for inventing the tools for us to use! I am wondering where I can find the complete list of the table including all ligand-receptor-TF-pathway data. I found one table...

gynecolojiji

Issues running TransCommuProfile

2

Hello! I have been trying to use your tool, but when I run the TransCommuProfile function, it runs for a while, and then R freezes and I have to restart...

elisulvaran

Normalised data

1

Hi, I would like to ask you about normalisation If I have rawCounts, what do you think it is the best way to do it? Thanks

Imm123

Issue with CreateObject_fromSeurat

1

Hello, I have been using this tool for some time now. And it has really given good results. However, right now I was running the same script I always have...

sidrahmaryam-cyber

Error when run getHyperPathway

1

Hi, When I tried to run the pathway activity analysis using example data. I encountered a error as follow: pathway.hyper.list

tqh003

How to compare cell communication

1

HI！ I have two groups, control group and drug group. I want to compare intercellular communication networks and internal regulatory signals between the two groups. Could you provide the related...

tu12dou