Shail

I mean, if I provide the nucleotide sequence, can kaiju get the classified nucleotide sequence. My raw illumina reads showed presence of some taxa which we did not expected. I...

Thanks. i will try that.

@michoug @rmFlynn I too came across the exact error. I did not find any duplicate headers in the input fasta file prepared by virsorter2. > Hi, I saw that they...

@michoug Thanks. I will check for that once more. @rmFlynn Hi, here are the input files [prepared by virsorter2](https://drive.google.com/file/d/1sZDmuwIaoXvwRNkUDnAuvjci3YnFCjfC/view?usp=sharing) I used following command to prepare these files virsorter run --seqname-suffix-off...

@rmFlynn Sorry for the trouble. I was actually looking at the virsorter input fasta file for duplicate headers instead of the output fasta. By renaming the duplicate header I could...

Thanks, Dr. Ben. Indeed it was the issue with thread numbers and ascp bin directory not being added to the PATH. It is working now. Thanks for the awsome package...

Hi, The command ran well and after downloading about half of the ENA ids threw following error. `Attempting download method ena-ascp for run ERR1879685 .. 04/29/2022 05:22:50 AM INFO: Using...

@wwood is there a way to resume the command operation once a task fails?

I could download the said file (ERR1879685) using wget without any error. Maybe it was a network issue. I will re-run Kingfisher with the remaining ENA (including the one that...

The second time I was able to download the said ENA files, however, came across a similar error with other ENA accessions. I guess it's due to an issue with...