Sepideh89

Question about Input Format for PAT File Generation

2

Hi! For generating the PAT files and running UXM, does the input have to be a BAM file, or is it also possible to use a CRAM file directly? Thanks!

running modkit dmr after `epi2me-labs/wf-human-variation` pipeline using mod

2

Hi, I ran my samples using the `epi2me-labs/wf-human-variation` pipeline using mod, and I obtained `.bedmethyl` files as the output. Now I’d like to run `modkit dmr` for differential analysis. Do...