Sandman-1

Hello! Thank you so much for such an awesome package. I don't know how you came up with this stuff, but God bless you for it! I constructed the following...

Pando Not Returning Expected GRNs and Limiting Target Genes to a Handful - Possibility of Problem with Mouse Genome?

24

Good afternoon! I have been sporadically tinkering with my GRN analysis for some time, and I am running into various problems. For starters, the number of unique target genes detected...

Update grn.R

1

The NetworkTFs() function does not return a data frame or matrix with transcription factor names as column names. As a result, when the program tries to find transcription factors to...

Maybe this might fix the motif2tf issue for the entire rest of the script.

Auto Chemistry Detection Failing and FIFO File Generation Problem

7

Hello! Thank you for such an excellent software. I am trying to run CeleScope v2.0.7 on raw fastqs from GSE203360, but it throws me the following error. - Exception: Auto...

BPCells::svds Failing on Large Matrix

7

Hello! Thank you so much for this package. I would like to run svds using the BPCells wrapper function on a matrix containing 9,096 genes and 4,188,533 cells. I followed...