Sandman-1

Results 7 comments of Sandman-1

Problem with Leverage Score Calculation for Integration of Single Cell Seurat Objects

Hello. I am also experiencing this type of issue. I have a dataset with 30 layers, 3 of which have fewer than 10 K cells and several others that have...

Error in infer_grn()

Hello @TerezaClarence! Just to make sure, the RNA assay does have variable features, correct?

Pando Not Returning Expected GRNs and Limiting Target Genes to a Handful - Possibility of Problem with Mouse Genome?

Some details regarding my code include adapting the provided motif2tf data frame in Pando to decapitalize the letters of each transcription factor name after the first letter to make it...

Pando Not Returning Expected GRNs and Limiting Target Genes to a Handful - Possibility of Problem with Mouse Genome?

Wow, I missed a lot! Trying GRN Analysis using the Signac method then. Eager to see new results! :)))

Auto Chemistry Detection Failing and FIFO File Generation Problem

Thank you! I am getting this error after adding the parameter, however. I add it to the end of the starsolo command within each sample-specific shell file. - celescope rna...

Auto Chemistry Detection Failing and FIFO File Generation Problem

You are a lifesaver. Thank you so much! Curious, how do you know which GexScope kit version a run is?

Auto Chemistry Detection Failing and FIFO File Generation Problem

Hello! I tried running the pipeline overnight, and it gave me this error when I woke up. - /usr/bin/STAR: line 7: 149706 Segmentation fault "${cmd}" "$@" Traceback (most recent call...