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                                            Sam Sims

Artic v5 mismatched primer names in artic-ncov2019 repo cause certain amplicons to be erroneously filtered/removed

### Description of the bug Hello! By default viralrecon pulls the Artic V5 bed file from: https://github.com/artic-network/artic-ncov2019/raw/master/primer_schemes/nCoV-2019/V5.3.2/SARS-CoV-2.scheme.bed However in this version of the bed file, the primer names are mismatched...

bug

Inconsistant formatting with wrapped text

**Describe the bug** First of all, great performance improvements in the latest update - actually made me revist a programme I was working on. However I have come across a...

Question: Minimap2 Alignment options

Hello! Nice crate, It would be nice to have the ability to build the minimap2 alignment options (i.e `--score-N`) in the same way the MapOpts or IdxOpts are currently implemented....