Sam Sims

Hi @jguhlin the only option I wanted to use, but I couldnt easily find was the gap open penalty (-O in minimap2). It might be nice to add to the...

Changes in [vcflib v1.0.2](https://github.com/vcflib/vcflib/releases/tag/v1.0.2) break snippy. As a workaround you can downgrade to < `1.0.2` eg `1.0.1` If you already have snippy installed via conda you can do `conda install...

I think this is a similar issue I outlined in more detail here https://github.com/artic-network/fieldbioinformatics/issues/125 with the artic minion step. You could examine your vcf files and see if it seems...

Hi @rob-p hope you don't mind me jumping in, I am having the same issue you outline in your first point (I am using crossbeam channels in a similar way...

Ah thanks that's super useful! I needed to set it to None in the thread closure. Agree it would be nice to be able to clone an`Aligner` without having to...

I did take a stab at this a while ago, implementing a new struct for the index - `MmIdx`, and then using an `Arc` to manage it Something like: ```rust...

hello! cool project, I actually wanted some of the functionality described in these issues so I could customise the pokemon generated for use in fastfetch, so I had a stab...

Cool, I will tidy up the code and open a PR. I do like the idea of having the ability to read from stdin, as it fits in nicely with...

I have opened a PR to add region support in #25 and will look at doing something with file based inputs in another PR (to keep things organised) let me...