Salvatore Raieli

plot different graphs with plot_network_clusters

3

Hi, To plot the communities it is very easy with plot_network_clusters, however it is tedious to plot each network in a cell (for instance using Jupiter or google Colab). In...

Question, how to show only somes labels?

4

I plotted a graph with graphistry, I want to then take stamp (a static image for a presentation) and I want to higlight only some nodes (the idea to show...

Precomputed embedding for all huuman proteins

2

Hi everyone, I would like to know if you have the precomputed embedding for the human proteins (not for other sequences). I am just interested in the vectors for the...

Can be used on CPU?

2

Hi, amazing works and very curious to try can be used on a CPU (or parallelized on different CPUs)? thank you, Salvatore

error with getSequence

7

Hi, I am using getSequence to retrieve upstream sequence of a gene. I followed the example that I found in the vignette but it did not work. ``` library(biomaRt) ensembl...

Very interesting model, I am wondering if this model will be available through HuggingFace.

Getting data from table

10

Very nice package. I am trying to write a script that for a tv series extract the content of the season episodes: ``` from mediawiki import MediaWiki wikipedia = MediaWiki()...

keras deep explainer

2

I am building a model using tensorflow keras (tensorflow 2.6), using sequential and dense layer. I have encountered different errors using shap. I found a solution on a stackoverflow question....

Comments and tips for the prompt

5

Hi, very solid and useful works. In this [repository](https://github.com/dave1010/tree-of-thought-prompting) they suggest an approach similar to tree-of-thoughts but which should be done in one prompt an example of this type of...

Hi, I am trying just to replicate the tutorial: https://nbviewer.org/github/theislab/diffxpy_tutorials/blob/master/diffxpy_tutorials/test/introduction_differential_testing.ipynb ``` import anndata import matplotlib.pyplot as plt import seaborn as sns import logging import numpy as np import pandas as...