Salvatore Raieli

icon company Oncodesign icon location Dijon icon location Senior Data Scientist Interested in Deep learning, Graph Neural Network

Results 22 comments of Salvatore Raieli

Do we have pre-computed embeddings of known protein sequences available for download?

Hi, I would like to know if you have the precomputed embedding for the human proteins. I am just interested in the vectors for the all human proteins (for example...

Precomputed embedding for all huuman proteins

Thank you very much, I have downloaded the reduced embedding and the CSV. The key names in the embedding file (h5) are numbers (0,12...). In the CSV I see I...

plot different graphs with plot_network_clusters

it may be useful, I did a simple test, just copying the function and adding ax in the nx draw functions ``` import warnings import numpy as np import matplotlib...

Question, how to show only somes labels?

Thanks for the answer, if I understood it is still not implemented?

Question, how to show only somes labels?

I guess so, I think useful in many context. the possible to highlight only some labels (I know many people in research would be interested, to maybe generate pic publication...

Can be used on CPU?

Thank you, I have just seen and definitely curious to try

error with getSequence

I am not so sure, I found an alternative solution: ``` mart

error with getSequence

> I'm having a similar problem with both the getSequence and getGene funcgtions of this package. I do not know in your case, my solution for me is working (changing...

error with getSequence

https://m.ensembl.org/info/about/mirrors.html The valid options are ’www’, ’uswest’, ’useast’, ’asia’.

BioGPT is now available in 🤗 Transformers

Hi, The BiogGPT checkpoint on transformers can be used for relation extraction on PubMed?