rosetta

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Dear Rosetta developers, I have successfully compiled the phenix-rosetta interface (see also my PR) and now I have tried to use the phenix.rosetta_refine. Unfortunately, I run into the following error:...

folmilsch

There are errors while building the PHENIX interface. I added the missing imports. These are not sorted according to "Project headers", "Utility headers" etc.

folmilsch

Remove is_surface() from Residue/ResidueType.

1

This function is confusing, as it's not talking about the surface of a protein, but mineral surfaces. The ResidueType property SURFACE isn't used frequently -- for the rare case it's...

roccomoretti

Fix issue with chain endings in cyclic peptide PDB reading.

1

@msklodow noticed that the InterfaceAnalyzer had an issue trying to score a cyclic peptide (chain B) bound to a protein (chain A). The reason for this is that the Rosetta...

roccomoretti

### Discussed in https://github.com/RosettaCommons/rosetta/discussions/147 Originally posted by **kabe89** September 4, 2024 I am currently trying to extract the pdb files from a silent output file generated by rna_denovo. the command...

kabe89