Rosa De Santis

icon company TIGEM icon location Pozzuoli icon location Master degree in Bioinformatics :woman_technologist: :dna: PhD candidate in Computational and quantitative biology :nerd_face:

Results 3 issues of Rosa De Santis

Use cellSNP on a big BAM file

1 comment

Hi! I would be grateful if you can answer my question. I am trying to use the cellSNP line tool on a large bam file (1.2 T) generated by SMARTseq....

enhancement

ValueError: vcf is not a valid file or directory. Please provide a valid file or directory.

8 comment

Hi Kevin , I'm trying this script but I'm running into this error during the prediction: (the vcf file was annotated with VEP) DEBUG | ezancestry.process:process_user_input:214 - list index out...

Unknown image format/type in nextflow pipeline

5 comment

I'm using singularity-ce version 4.0.3 on a HPC. I'm trying to pull a docker container with singularity in a nextflow pipeline. After updating singularity to version 4.0.3 I'm having issues...

needs more info