Rosa De Santis

The docker container that I'm trying to pull in the pipeline is docker://staphb/seqtk:1.3. Everything worked well with the older version of singularity 3.5. In the singularity cachedir, I have this...

Thank you for your help, I really appreciate it. My singularity cachedir is defined in the .bashrc file, and this image staphb-seqtk-1.3.img is pulled from nextflow. Before having the unknown...

Hi @arvkevi , I obtained the prediction.csv file and plotted it. The problem was probably due to a malformed file; I generated again the VCF file adding some parameters in...

I noticed it, also using snps I've same results. The samples are not related, they belong two different person. And yes, they have the same AISNPs, it's weird, isn't? In...

Hi @arvkevi also with other 2 samples I've same problem. Following head of vcf with SNPs that I give in input. Is that correct for Ezancestry? ``` #CHROM POS ID...

Yes, you're right! I've 0 of out of possible 55 using the Kidd set and 1 of 127 using the Seldin set. Do you think the problem is the reference...

Same problem. I don't have menr.pkl and DEM_*_topics.pkl after running run_pycistarget. I have only CTX files. What could be the problem @SeppeDeWinter ?

Thanks @SeppeDeWinter using a single core, it worked!

Oddly, it worked without errors and gave me in output of all the files using a single core. Best, Rosa