Rohit Satyam

wilcox_test `p.adjust.method = "none"` option doesn't work and padj column missing

1

Dear @kassambara. Thanks for developing this package. It's easy to perform statistical test on multiple sample. But I have an observation (possibly a bug). When running the `wilcox_test` with `p.adjust.method...

Discussion on Masking the regions with coverage less than 20X

6

Dear @priesgo While going through the pipeline, I realized that the VCF2FASTA does not masks the regions of low coverage. In amplicon sequencing data, there might be regions deprived of...

What is the meaning of D1, D2, D3, C1, C2, C3 etc in Kraken Report

1

Hi Pardon me if I missed something in the Kraken2 manual. I was going through the Kraken2 reports generated using Struo2 Kraken2 indexes and NCBI Refseq indexes. And though I...

Thanks for providing us with hassle-free and fast dehosting tool. I am however running into an issue when using PE fastq files and providing the custom reference fasta file of...

Hi I can use the `e_liquid` function and it looks nice but I wanna insert it in PowerPoint as a gif. How can I save it as a gif?

insufficient unique points for computing knee/inflection points

1

Hi Aron I just started my Single Cell analysis and was trying to make knee plots. I read the 10X data using `read10xCounts` function performed filtering using the following function:...

suggestion on filtering genes of interest

2

Hi @dosorio I want to ask if you have any recommended way of filtering the DEGs that we get out of scTenifoldKnK. I observed that there are genes which have...

Guidance to set nc_nCells and nc_nComp parameters

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Hi @dosorio I have a single cell dataset containing 30K cells and am performing KO of a few genes. I wish to understand how the choice of `nc_nCells` and `nc_nComp`...

[BUG] All arrays must be of the same length

1

**Describe the bug** Unable to run pysradb for GSE198257 **To Reproduce** Steps to reproduce the behavior: ``` ## Installation: pip install git+https://github.com/saketkc/pysradb pysradb gse-to-srp GSE198257 Traceback (most recent call last):...

I am trying to plot a categorical variable (olive track in left figure). But rather than a strip, I was wondering if it is possible to convert every category of...