Rathanin-github

get 0 variant after snippy

7

Hi @tseemann When I update my snippy to 4.6.0, I got 0 varaint after runing. snps.csv contain nothing. Please see my snps.log below Your response is greatly apriciate ! ###...

Hi @tseemann I use my previous command that worked well with my previous ubuntu and conda environment. The command is snippy-core --ref K96243.gb 10-* When use this command with snippy...

Hi sir Sorry that bother you again, since I am very new bioinformatic user. I have attempt to construct the ML tree of two chromosome bacteria. I split chr1 and...

snippy-clean_full_aln did not replace --- by N

3

Hi @tseemann I have re-run snippy of short read (R1 and R2) against reference genome. after running snippy core, I got a core.full.aln that contain "----". I use snippy-clean_full_aln to...