Rashesh

Expecting ploidyVcfFile in CanvasPartition

10

Hi, In the latest version 1.38 when I am running Somatic-WGS workflow, it is expecting a ploidyVcfFile at the 5th step 'CanvasPartition'. So the command has: ${DOTNET}/dotnet {$CANVAS}/CanvasPartition/CanvasPartition.dll -p ""...

Bcftools isec GT aware

1

Hello, Is there a way to run bcftools isec with taking genotypes into consideration? I want to compare multiple VCF files and check even in the same variant call, how...

Hello, I wanted to start using Kourami in one of my projects. And am wondering if this is still being maintained. Thanks, Rashesh

Hello, I was wondering if you have any suggestions on what cutoff to use for the bottleneck weights. Most of the values from my data fall within the range of...