Rashesh

Hi Eric, I am sorry if you have explained this somewhere, but do you have an example of how the --ploidy-vcf input file should look like? Thanks

So is this supposed to be the ploidy of chromosomes in the Normal sample? CANVAS will then predict the tumor purity and ploidy from the sample-b-allele-vcf?

Cool, just wanted to confirm that. Thank you.

Hi Eric, What was the source for the GRCh37/WholeGenomeFasta/genome.fa and GRCh38/WholeGenomeFasta/genome.fa ? If I was to use the reference genome that we use for mapping other than the following are...

We are using GRCH37 with decoy and moving forward we would be using GRCH38 (including all the contigs and HLA contigs). We might need to test that. Will update when...

Hi Eric, Has this been implemented in the newest version? The Somatic-WGS workflow takes about 90GB of memory to run, which might be difficult to provide all the time. Thanks,...

Hi, Sorry for jumping in, but I am also interested in editing the preprocessing scripts to work on the hg19 reference. Please do let me know if this was resolved...